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refund - Regression with Functional Data

Methods for regression for functional data, including function-on-scalar, scalar-on-function, and function-on-function regression. Some of the functions are applicable to image data.

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10.41 score 52 stars 22 dependents 869 scripts 2.4k downloads

registr - Curve Registration for Exponential Family Functional Data

A method for performing joint registration and functional principal component analysis for curves (functional data) that are generated from exponential family distributions. This mainly implements the algorithms described in 'Wrobel et al. (2019)' <doi:10.1111/biom.12963> and further adapts them to potentially incomplete curves where (some) curves are not observed from the beginning and/or until the end of the common domain. Curve registration can be used to better understand patterns in functional data by separating curves into phase and amplitude variability. This software handles both binary and continuous functional data, and is especially applicable in accelerometry and wearable technology.

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openblascpp

6.91 score 17 stars 32 scripts 303 downloads

refund.shiny - Interactive Plotting for Functional Data Analyses

Produces Shiny applications for different types of popular functional data analyses. The functional data analyses are implemented in the refund package, then refund.shiny reads in the refund object and implements an object-specific set of plots based on the object class using S3.

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5.45 score 4 stars 39 scripts 336 downloads

mxfda - A Functional Data Analysis Package for Spatial Single Cell Data

Methods and tools for deriving spatial summary functions from single-cell imaging data and performing functional data analyses. Functions can be applied to other single-cell technologies such as spatial transcriptomics. Functional regression and functional principal component analysis methods are in the 'refund' package <https://cran.r-project.org/package=refund> while calculation of the spatial summary functions are from the 'spatstat' package <https://spatstat.org/>.

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4.43 score 1 stars 18 scripts 343 downloads

VectraPolarisData - Vectra Polaris and Vectra 3 multiplex single-cell imaging data

Provides two multiplex imaging datasets collected on Vectra instruments at the University of Colorado Anschutz Medical Campus. Data are provided as a Spatial Experiment objects. Data is provided in tabular form and has been segmented and phenotyped using Inform software. Raw .tiff files are not included.

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experimenthubexperimentdataspatialdatasinglecelldatahomo_sapiens_datareproducibleresearchdatapkg

4.15 score 1 stars 14 scripts